Source code for botorch.models.transforms.input
#!/usr/bin/env python3
# Copyright (c) Meta Platforms, Inc. and affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
r"""
Input Transformations.
These classes implement a variety of transformations for
input parameters including: learned input warping functions,
rounding functions, and log transformations. The input transformation
is typically part of a Model and applied within the model.forward()
method.
"""
from __future__ import annotations
from abc import ABC, abstractmethod
from collections import OrderedDict
from typing import Any, Callable, Dict, List, Optional, Union
from warnings import warn
import numpy as np
import torch
from botorch.exceptions.errors import BotorchTensorDimensionError
from botorch.exceptions.warnings import UserInputWarning
from botorch.models.transforms.utils import subset_transform
from botorch.models.utils import fantasize
from botorch.utils.rounding import approximate_round, OneHotArgmaxSTE, RoundSTE
from gpytorch import Module as GPyTorchModule
from gpytorch.constraints import GreaterThan
from gpytorch.priors import Prior
from torch import LongTensor, nn, Tensor
from torch.distributions import Kumaraswamy
from torch.nn import Module, ModuleDict
from torch.nn.functional import one_hot
[docs]
class InputTransform(ABC):
r"""Abstract base class for input transforms.
Note: Input transforms must inherit from `torch.nn.Module`. This
is deferred to the subclasses to avoid any potential conflict
between `gpytorch.module.Module` and `torch.nn.Module` in `Warp`.
Properties:
is_one_to_many: A boolean denoting whether the transform produces
multiple values for each input.
transform_on_train: A boolean indicating whether to apply the
transform in train() mode.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode.
transform_on_fantasize: A boolean indicating whether to apply
the transform when called from within a `fantasize` call.
"""
is_one_to_many: bool = False
transform_on_eval: bool
transform_on_train: bool
transform_on_fantasize: bool
[docs]
def forward(self, X: Tensor) -> Tensor:
r"""Transform the inputs to a model.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n' x d`-dim tensor of transformed inputs.
"""
if self.training:
if self.transform_on_train:
return self.transform(X)
elif self.transform_on_eval:
if fantasize.off() or self.transform_on_fantasize:
return self.transform(X)
return X
[docs]
@abstractmethod
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs to a model.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
pass # pragma: no cover
[docs]
def untransform(self, X: Tensor) -> Tensor:
r"""Un-transform the inputs to a model.
Args:
X: A `batch_shape x n x d`-dim tensor of transformed inputs.
Returns:
A `batch_shape x n x d`-dim tensor of un-transformed inputs.
"""
raise NotImplementedError(
f"{self.__class__.__name__} does not implement the `untransform` method."
)
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Note: The reason that a custom equals method is defined rather than
defining an __eq__ method is because defining an __eq__ method sets
the __hash__ method to None. Hashing modules is currently used in
pytorch. See https://github.com/pytorch/pytorch/issues/7733.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
other_state_dict = other.state_dict()
return (
type(self) is type(other)
and (self.transform_on_train == other.transform_on_train)
and (self.transform_on_eval == other.transform_on_eval)
and (self.transform_on_fantasize == other.transform_on_fantasize)
and all(
torch.allclose(v, other_state_dict[k].to(v))
for k, v in self.state_dict().items()
)
)
[docs]
def preprocess_transform(self, X: Tensor) -> Tensor:
r"""Apply transforms for preprocessing inputs.
The main use cases for this method are 1) to preprocess training data
before calling `set_train_data` and 2) preprocess `X_baseline` for noisy
acquisition functions so that `X_baseline` is "preprocessed" with the
same transformations as the cached training inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of (transformed) inputs.
"""
if self.transform_on_train:
# We need to disable learning of bounds / affine coefficients here.
# See why: https://github.com/pytorch/botorch/issues/1078.
if hasattr(self, "learn_coefficients"):
learn_coefficients = self.learn_coefficients
self.learn_coefficients = False
result = self.transform(X)
self.learn_coefficients = learn_coefficients
return result
else:
return self.transform(X)
return X
[docs]
class ChainedInputTransform(InputTransform, ModuleDict):
r"""An input transform representing the chaining of individual transforms."""
def __init__(self, **transforms: InputTransform) -> None:
r"""Chaining of input transforms.
Args:
transforms: The transforms to chain. Internally, the names of the
kwargs are used as the keys for accessing the individual
transforms on the module.
Example:
>>> tf1 = Normalize(d=2)
>>> tf2 = Normalize(d=2)
>>> tf = ChainedInputTransform(tf1=tf1, tf2=tf2)
>>> list(tf.keys())
['tf1', 'tf2']
>>> tf["tf1"]
Normalize()
"""
super().__init__(OrderedDict(transforms))
self.transform_on_train = False
self.transform_on_eval = False
self.transform_on_fantasize = False
for tf in transforms.values():
self.is_one_to_many |= tf.is_one_to_many
self.transform_on_train |= tf.transform_on_train
self.transform_on_eval |= tf.transform_on_eval
self.transform_on_fantasize |= tf.transform_on_fantasize
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs to a model.
Individual transforms are applied in sequence.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
for tf in self.values():
X = tf.forward(X)
return X
[docs]
def untransform(self, X: Tensor) -> Tensor:
r"""Un-transform the inputs to a model.
Un-transforms of the individual transforms are applied in reverse sequence.
Args:
X: A `batch_shape x n x d`-dim tensor of transformed inputs.
Returns:
A `batch_shape x n x d`-dim tensor of un-transformed inputs.
"""
for tf in reversed(self.values()):
X = tf.untransform(X)
return X
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
return super().equals(other=other) and all(
t1.equals(t2) for t1, t2 in zip(self.values(), other.values())
)
[docs]
def preprocess_transform(self, X: Tensor) -> Tensor:
r"""Apply transforms for preprocessing inputs.
The main use cases for this method are 1) to preprocess training data
before calling `set_train_data` and 2) preprocess `X_baseline` for noisy
acquisition functions so that `X_baseline` is "preprocessed" with the
same transformations as the cached training inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of (transformed) inputs.
"""
for tf in self.values():
X = tf.preprocess_transform(X)
return X
[docs]
class ReversibleInputTransform(InputTransform, ABC):
r"""An abstract class for a reversible input transform.
Properties:
reverse: A boolean indicating if the functionality of transform
and untransform methods should be swapped.
"""
reverse: bool
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
return self._untransform(X) if self.reverse else self._transform(X)
[docs]
def untransform(self, X: Tensor) -> Tensor:
r"""Un-transform the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of un-transformed inputs.
"""
return self._transform(X) if self.reverse else self._untransform(X)
@abstractmethod
def _transform(self, X: Tensor) -> Tensor:
r"""Forward transform the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
pass # pragma: no cover
@abstractmethod
def _untransform(self, X: Tensor) -> Tensor:
r"""Reverse transform the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
pass # pragma: no cover
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
return super().equals(other=other) and (self.reverse == other.reverse)
[docs]
class AffineInputTransform(ReversibleInputTransform, Module):
def __init__(
self,
d: int,
coefficient: Tensor,
offset: Tensor,
indices: Optional[Union[List[int], Tensor]] = None,
batch_shape: torch.Size = torch.Size(), # noqa: B008
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
reverse: bool = False,
) -> None:
r"""Apply affine transformation to input:
`output = (input - offset) / coefficient`
Args:
d: The dimension of the input space.
coefficient: Tensor of linear coefficients, shape must to be
broadcastable with `(batch_shape x n x d)`-dim input tensors.
offset: Tensor of offset coefficients, shape must to be
broadcastable with `(batch_shape x n x d)`-dim input tensors.
indices: The indices of the inputs to transform. If omitted,
take all dimensions of the inputs into account. Either a list of ints
or a Tensor of type `torch.long`.
batch_shape: The batch shape of the inputs (assuming input tensors
of shape `batch_shape x n x d`). If provided, perform individual
transformation per batch, otherwise uses a single transformation.
transform_on_train: A boolean indicating whether to apply the
transform in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
reverse: A boolean indicating whether the forward pass should untransform
the inputs.
"""
super().__init__()
if (indices is not None) and (len(indices) == 0):
raise ValueError("`indices` list is empty!")
if (indices is not None) and (len(indices) > 0):
indices = torch.as_tensor(
indices, dtype=torch.long, device=coefficient.device
)
if len(indices) > d:
raise ValueError("Can provide at most `d` indices!")
if (indices > d - 1).any():
raise ValueError("Elements of `indices` have to be smaller than `d`!")
if len(indices.unique()) != len(indices):
raise ValueError("Elements of `indices` tensor must be unique!")
self.register_buffer("indices", indices)
torch.broadcast_shapes(coefficient.shape, offset.shape)
self._d = d
self.register_buffer("_coefficient", coefficient)
self.register_buffer("_offset", offset)
self.batch_shape = batch_shape
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
self.reverse = reverse
@property
def coefficient(self) -> Tensor:
r"""The tensor of linear coefficients."""
coeff = self._coefficient
return coeff if self.learn_coefficients and self.training else coeff.detach()
@property
def offset(self) -> Tensor:
r"""The tensor of offset coefficients."""
offset = self._offset
return offset if self.learn_coefficients and self.training else offset.detach()
@property
def learn_coefficients(self) -> bool:
return getattr(self, "_learn_coefficients", False)
@learn_coefficients.setter
def learn_coefficients(self, value: bool) -> None:
r"""A boolean denoting whether to learn the coefficients
from inputs during model training.
"""
self._learn_coefficients = value
@subset_transform
def _transform(self, X: Tensor) -> Tensor:
r"""Apply affine transformation to input.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
if self.learn_coefficients and self.training:
self._check_shape(X)
self._update_coefficients(X)
self._to(X)
return (X - self.offset) / self.coefficient
@subset_transform
def _untransform(self, X: Tensor) -> Tensor:
r"""Apply inverse of affine transformation.
Args:
X: A `batch_shape x n x d`-dim tensor of transformed inputs.
Returns:
A `batch_shape x n x d`-dim tensor of un-transformed inputs.
"""
self._to(X)
return self.coefficient * X + self.offset
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
if hasattr(self, "indices") != hasattr(other, "indices"):
return False
isequal = (
super().equals(other=other)
and (self._d == other._d)
and torch.allclose(self.coefficient, other.coefficient)
and torch.allclose(self.offset, other.offset)
and self.learn_coefficients == other.learn_coefficients
)
if hasattr(self, "indices"):
isequal = isequal and (self.indices == other.indices).all()
return isequal
def _check_shape(self, X: Tensor) -> None:
"""Checking input dimensions, included to increase code sharing
among the derived classes Normalize and InputStandardize.
"""
if X.size(-1) != self.offset.size(-1):
raise BotorchTensorDimensionError(
f"Wrong input dimension. Received {X.size(-1)}, "
f"expected {self.offset.size(-1)}."
)
n = len(self.batch_shape) + 2
if X.ndim < n:
raise ValueError(
f"`X` must have at least {n} dimensions, {n - 2} batch and 2 innate"
f" , but has {X.ndim}."
)
torch.broadcast_shapes(self.coefficient.shape, self.offset.shape, X.shape)
def _to(self, X: Tensor) -> None:
r"""Makes coefficient and offset have same device and dtype as X."""
self._coefficient = self.coefficient.to(X)
self._offset = self.offset.to(X)
def _update_coefficients(self, X: Tensor) -> None:
r"""Updates affine coefficients. Implemented by subclasses,
e.g. Normalize and InputStandardize.
"""
raise NotImplementedError(
"Only subclasses of AffineInputTransform implement "
"_update_coefficients, e.g. Normalize and InputStandardize."
)
[docs]
class Normalize(AffineInputTransform):
r"""Normalize the inputs to the unit cube.
If no explicit bounds are provided this module is stateful: If in train mode,
calling `forward` updates the module state (i.e. the normalizing bounds). If
in eval mode, calling `forward` simply applies the normalization using the
current module state.
"""
def __init__(
self,
d: int,
indices: Optional[Union[List[int], Tensor]] = None,
bounds: Optional[Tensor] = None,
batch_shape: torch.Size = torch.Size(), # noqa: B008
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
reverse: bool = False,
min_range: float = 1e-8,
learn_bounds: Optional[bool] = None,
almost_zero: float = 1e-12,
) -> None:
r"""Normalize the inputs to the unit cube.
Args:
d: The dimension of the input space.
indices: The indices of the inputs to normalize. If omitted,
take all dimensions of the inputs into account.
bounds: If provided, use these bounds to normalize the inputs. If
omitted, learn the bounds in train mode.
batch_shape: The batch shape of the inputs (assuming input tensors
of shape `batch_shape x n x d`). If provided, perform individual
normalization per batch, otherwise uses a single normalization.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
reverse: A boolean indicating whether the forward pass should untransform
the inputs.
min_range: If the range of an input dimension is smaller than `min_range`,
that input dimension will not be normalized. This is equivalent to
using bounds of `[0, 1]` for this dimension, and helps avoid division
by zero errors and related numerical issues. See the example below.
NOTE: This only applies if `learn_bounds=True`.
learn_bounds: Whether to learn the bounds in train mode. Defaults
to False if bounds are provided, otherwise defaults to True.
Example:
>>> t = Normalize(d=2)
>>> t(torch.tensor([[3., 2.], [3., 6.]]))
... tensor([[3., 2.],
... [3., 6.]])
>>> t.eval()
... Normalize()
>>> t(torch.tensor([[3.5, 2.8]]))
... tensor([[3.5, 0.2]])
>>> t.bounds
... tensor([[0., 2.],
... [1., 6.]])
>>> t.coefficient
... tensor([[1., 4.]])
"""
if learn_bounds is not None:
self.learn_coefficients = learn_bounds
else:
self.learn_coefficients = bounds is None
transform_dimension = d if indices is None else len(indices)
if bounds is not None:
if indices is not None and bounds.size(-1) == d:
bounds = bounds[..., indices]
if bounds.size(-1) != transform_dimension:
raise BotorchTensorDimensionError(
"Dimensions of provided `bounds` are incompatible with "
f"transform_dimension = {transform_dimension}!"
)
offset = bounds[..., 0:1, :]
coefficient = bounds[..., 1:2, :] - offset
if coefficient.ndim > 2:
batch_shape = coefficient.shape[:-2]
else:
coefficient = torch.ones(*batch_shape, 1, transform_dimension)
offset = torch.zeros(*batch_shape, 1, transform_dimension)
if self.learn_coefficients is False:
warn(
"learn_bounds is False and no bounds were provided. The bounds "
"will not be updated and the transform will be a no-op.",
UserInputWarning,
)
super().__init__(
d=d,
coefficient=coefficient,
offset=offset,
indices=indices,
batch_shape=batch_shape,
transform_on_train=transform_on_train,
transform_on_eval=transform_on_eval,
transform_on_fantasize=transform_on_fantasize,
reverse=reverse,
)
self.min_range = min_range
@property
def ranges(self):
return self.coefficient
@property
def mins(self):
return self.offset
@property
def bounds(self) -> Tensor:
r"""The bounds used for normalizing the inputs."""
return torch.cat([self.offset, self.offset + self.coefficient], dim=-2)
@property
def learn_bounds(self) -> bool:
return self.learn_coefficients
def _update_coefficients(self, X) -> None:
"""Computes the normalization bounds and updates the affine
coefficients, which determine the base class's behavior.
"""
# Aggregate mins and ranges over extra batch and marginal dims
batch_ndim = min(len(self.batch_shape), X.ndim - 2) # batch rank of `X`
reduce_dims = (*range(X.ndim - batch_ndim - 2), X.ndim - 2)
offset = torch.amin(X, dim=reduce_dims).unsqueeze(-2)
coefficient = torch.amax(X, dim=reduce_dims).unsqueeze(-2) - offset
almost_zero = coefficient < self.min_range
self._coefficient = torch.where(almost_zero, 1.0, coefficient)
self._offset = torch.where(almost_zero, 0.0, offset)
[docs]
def get_init_args(self) -> Dict[str, Any]:
r"""Get the arguments necessary to construct an exact copy of the transform."""
return {
"d": self._d,
"indices": getattr(self, "indices", None),
"bounds": self.bounds,
"batch_shape": self.batch_shape,
"transform_on_train": self.transform_on_train,
"transform_on_eval": self.transform_on_eval,
"transform_on_fantasize": self.transform_on_fantasize,
"reverse": self.reverse,
"min_range": self.min_range,
"learn_bounds": self.learn_bounds,
}
[docs]
class InputStandardize(AffineInputTransform):
r"""Standardize inputs (zero mean, unit variance).
In train mode, calling `forward` updates the module state
(i.e. the mean/std normalizing constants). If in eval mode, calling `forward`
simply applies the standardization using the current module state.
"""
def __init__(
self,
d: int,
indices: Optional[Union[List[int], Tensor]] = None,
batch_shape: torch.Size = torch.Size(), # noqa: B008
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
reverse: bool = False,
min_std: float = 1e-8,
) -> None:
r"""Standardize inputs (zero mean, unit variance).
Args:
d: The dimension of the input space.
indices: The indices of the inputs to standardize. If omitted,
take all dimensions of the inputs into account.
batch_shape: The batch shape of the inputs (asssuming input tensors
of shape `batch_shape x n x d`). If provided, perform individual
normalization per batch, otherwise uses a single normalization.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True
reverse: A boolean indicating whether the forward pass should untransform
the inputs.
min_std: If the standard deviation of an input dimension is smaller than
`min_std`, that input dimension will not be standardized. This is
equivalent to using a standard deviation of 1.0 and a mean of 0.0 for
this dimension, and helps avoid division by zero errors and related
numerical issues.
"""
transform_dimension = d if indices is None else len(indices)
super().__init__(
d=d,
coefficient=torch.ones(*batch_shape, 1, transform_dimension),
offset=torch.zeros(*batch_shape, 1, transform_dimension),
indices=indices,
batch_shape=batch_shape,
transform_on_train=transform_on_train,
transform_on_eval=transform_on_eval,
transform_on_fantasize=transform_on_fantasize,
reverse=reverse,
)
self.min_std = min_std
self.learn_coefficients = True
@property
def stds(self):
return self.coefficient
@property
def means(self):
return self.offset
def _update_coefficients(self, X: Tensor) -> None:
"""Computes the normalization bounds and updates the affine
coefficients, which determine the base class's behavior.
"""
# Aggregate means and standard deviations over extra batch and marginal dims
batch_ndim = min(len(self.batch_shape), X.ndim - 2) # batch rank of `X`
reduce_dims = (*range(X.ndim - batch_ndim - 2), X.ndim - 2)
coefficient, offset = (
values.unsqueeze(-2)
for values in torch.std_mean(X, dim=reduce_dims, unbiased=True)
)
almost_zero = coefficient < self.min_std
self._coefficient = torch.where(almost_zero, 1.0, coefficient)
self._offset = torch.where(almost_zero, 0.0, offset)
[docs]
class Round(InputTransform, Module):
r"""A discretization transformation for discrete inputs.
If `approximate=False` (the default), uses PyTorch's `round`.
If `approximate=True`, a differentiable approximate rounding function is
used, with a temperature parameter of `tau`. This method is a piecewise
approximation of a rounding function where each piece is a hyperbolic
tangent function.
For integers, this will typically be used in conjunction
with normalization as follows:
In eval() mode (i.e. after training), the inputs pass
would typically be normalized to the unit cube (e.g. during candidate
optimization). 1. These are unnormalized back to the raw input space.
2. The integers are rounded. 3. All values are normalized to the unit
cube.
In train() mode, the inputs can either (a) be normalized to the unit
cube or (b) provided using their raw values. In the case of (a)
transform_on_train should be set to True, so that the normalized inputs
are unnormalized before rounding. In the case of (b) transform_on_train
should be set to False, so that the raw inputs are rounded and then
normalized to the unit cube.
By default, the straight through estimators are used for the gradients as
proposed in [Daulton2022bopr]_. This transformation supports differentiable
approximate rounding (currently only for integers). The rounding function
is approximated with a piece-wise function where each piece is a hyperbolic
tangent function.
For categorical parameters, the input must be one-hot encoded.
Example:
>>> bounds = torch.tensor([[0, 5], [0, 1], [0, 1]]).t()
>>> integer_indices = [0]
>>> categorical_features = {1: 2}
>>> unnormalize_tf = Normalize(
>>> d=d,
>>> bounds=bounds,
>>> transform_on_eval=True,
>>> transform_on_train=True,
>>> reverse=True,
>>> )
>>> round_tf = Round(integer_indices, categorical_features)
>>> normalize_tf = Normalize(d=d, bounds=bounds)
>>> tf = ChainedInputTransform(
>>> tf1=unnormalize_tf, tf2=round_tf, tf3=normalize_tf
>>> )
"""
def __init__(
self,
integer_indices: Union[List[int], LongTensor, None] = None,
categorical_features: Optional[Dict[int, int]] = None,
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
approximate: bool = False,
tau: float = 1e-3,
) -> None:
r"""Initialize transform.
Args:
integer_indices: The indices of the integer inputs.
categorical_features: A dictionary mapping the starting index of each
categorical feature to its cardinality. This assumes that categoricals
are one-hot encoded.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
approximate: A boolean indicating whether approximate or exact
rounding should be used. Default: False.
tau: The temperature parameter for approximate rounding.
"""
if approximate and categorical_features is not None:
raise NotImplementedError
super().__init__()
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
integer_indices = integer_indices if integer_indices is not None else []
self.register_buffer(
"integer_indices", torch.as_tensor(integer_indices, dtype=torch.long)
)
self.categorical_features = categorical_features or {}
self.approximate = approximate
self.tau = tau
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Discretize the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of discretized inputs.
"""
X_rounded = X.clone()
# round integers
X_int = X_rounded[..., self.integer_indices]
if self.approximate:
X_int = approximate_round(X_int, tau=self.tau)
else:
X_int = RoundSTE.apply(X_int)
X_rounded[..., self.integer_indices] = X_int
# discrete categoricals to the category with the largest value
# in the continuous relaxation of the one-hot encoding
for start, card in self.categorical_features.items():
end = start + card
X_rounded[..., start:end] = OneHotArgmaxSTE.apply(X[..., start:end])
return X_rounded
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
return (
super().equals(other=other)
and (self.integer_indices == other.integer_indices).all()
and self.categorical_features == other.categorical_features
and self.approximate == other.approximate
and self.tau == other.tau
)
[docs]
def get_init_args(self) -> Dict[str, Any]:
r"""Get the arguments necessary to construct an exact copy of the transform."""
return {
"integer_indices": self.integer_indices,
"categorical_features": self.categorical_features,
"transform_on_train": self.transform_on_train,
"transform_on_eval": self.transform_on_eval,
"transform_on_fantasize": self.transform_on_fantasize,
"approximate": self.approximate,
"tau": self.tau,
}
[docs]
class Log10(ReversibleInputTransform, Module):
r"""A base-10 log transformation."""
def __init__(
self,
indices: List[int],
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
reverse: bool = False,
) -> None:
r"""Initialize transform.
Args:
indices: The indices of the inputs to log transform.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
reverse: A boolean indicating whether the forward pass should untransform
the inputs.
"""
super().__init__()
self.register_buffer("indices", torch.tensor(indices, dtype=torch.long))
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
self.reverse = reverse
@subset_transform
def _transform(self, X: Tensor) -> Tensor:
r"""Log transform the inputs.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d`-dim tensor of transformed inputs.
"""
return X.log10()
@subset_transform
def _untransform(self, X: Tensor) -> Tensor:
r"""Reverse the log transformation.
Args:
X: A `batch_shape x n x d`-dim tensor of normalized inputs.
Returns:
A `batch_shape x n x d`-dim tensor of un-normalized inputs.
"""
return 10.0**X
[docs]
class Warp(ReversibleInputTransform, GPyTorchModule):
r"""A transform that uses learned input warping functions.
Each specified input dimension is warped using the CDF of a
Kumaraswamy distribution. Typically, MAP estimates of the
parameters of the Kumaraswamy distribution, for each input
dimension, are learned jointly with the GP hyperparameters.
TODO: implement support using independent warping functions
for each output in batched multi-output and multi-task models.
For now, ModelListGPs should be used to learn independent warping
functions for each output.
"""
# TODO: make minimum value dtype-dependent
_min_concentration_level = 1e-4
def __init__(
self,
indices: List[int],
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
reverse: bool = False,
eps: float = 1e-7,
concentration1_prior: Optional[Prior] = None,
concentration0_prior: Optional[Prior] = None,
batch_shape: Optional[torch.Size] = None,
) -> None:
r"""Initialize transform.
Args:
indices: The indices of the inputs to warp.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
reverse: A boolean indicating whether the forward pass should untransform
the inputs.
eps: A small value used to clip values to be in the interval (0, 1).
concentration1_prior: A prior distribution on the concentration1 parameter
of the Kumaraswamy distribution.
concentration0_prior: A prior distribution on the concentration0 parameter
of the Kumaraswamy distribution.
batch_shape: An optional batch shape, for learning independent warping
parameters for each batch of inputs. This should match the input batch
shape of the model (i.e., `train_X.shape[:-2]`).
NOTE: This is only supported for single-output models.
"""
super().__init__()
self.register_buffer("indices", torch.tensor(indices, dtype=torch.long))
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
self.reverse = reverse
self.batch_shape = batch_shape or torch.Size([])
self._X_min = eps
self._X_range = 1 - 2 * eps
if len(self.batch_shape) > 0:
# Note: this follows the gpytorch shape convention for lengthscales
# There is ongoing discussion about the extra `1`.
# TODO: update to follow new gpytorch convention resulting from
# https://github.com/cornellius-gp/gpytorch/issues/1317
batch_shape = self.batch_shape + torch.Size([1])
else:
batch_shape = self.batch_shape
for i in (0, 1):
p_name = f"concentration{i}"
self.register_parameter(
p_name,
nn.Parameter(torch.full(batch_shape + self.indices.shape, 1.0)),
)
if concentration0_prior is not None:
self.register_prior(
"concentration0_prior",
concentration0_prior,
lambda m: m.concentration0,
lambda m, v: m._set_concentration(i=0, value=v),
)
if concentration1_prior is not None:
self.register_prior(
"concentration1_prior",
concentration1_prior,
lambda m: m.concentration1,
lambda m, v: m._set_concentration(i=1, value=v),
)
for i in (0, 1):
p_name = f"concentration{i}"
constraint = GreaterThan(
self._min_concentration_level,
transform=None,
# set the initial value to be the identity transformation
initial_value=1.0,
)
self.register_constraint(param_name=p_name, constraint=constraint)
def _set_concentration(self, i: int, value: Union[float, Tensor]) -> None:
if not torch.is_tensor(value):
value = torch.as_tensor(value).to(self.concentration0)
self.initialize(**{f"concentration{i}": value})
@subset_transform
def _transform(self, X: Tensor) -> Tensor:
r"""Warp the inputs through the Kumaraswamy CDF.
Args:
X: A `input_batch_shape x (batch_shape) x n x d`-dim tensor of inputs.
batch_shape here can either be self.batch_shape or 1's such that
it is broadcastable with self.batch_shape if self.batch_shape is set.
Returns:
A `input_batch_shape x (batch_shape) x n x d`-dim tensor of transformed
inputs.
"""
# normalize to [eps, 1-eps], IDEA: could use Normalize and ChainedTransform.
return self._k.cdf(
torch.clamp(
X * self._X_range + self._X_min,
self._X_min,
1.0 - self._X_min,
)
)
@subset_transform
def _untransform(self, X: Tensor) -> Tensor:
r"""Warp the inputs through the Kumaraswamy inverse CDF.
Args:
X: A `input_batch_shape x batch_shape x n x d`-dim tensor of inputs.
Returns:
A `input_batch_shape x batch_shape x n x d`-dim tensor of transformed
inputs.
"""
if len(self.batch_shape) > 0:
if self.batch_shape != X.shape[-2 - len(self.batch_shape) : -2]:
raise BotorchTensorDimensionError(
"The right most batch dims of X must match self.batch_shape: "
f"({self.batch_shape})."
)
# unnormalize from [eps, 1-eps] to [0,1]
return ((self._k.icdf(X) - self._X_min) / self._X_range).clamp(0.0, 1.0)
@property
def _k(self) -> Kumaraswamy:
"""Returns a Kumaraswamy distribution with the concentration parameters."""
return Kumaraswamy(
concentration1=self.concentration1,
concentration0=self.concentration0,
)
[docs]
class AppendFeatures(InputTransform, Module):
r"""A transform that appends the input with a given set of features either
provided beforehand or generated on the fly via a callable.
As an example, the predefined set of features can be used with
`RiskMeasureMCObjective` to optimize risk measures as described in
[Cakmak2020risk]_. A tutorial notebook implementing the rhoKG acqusition
function introduced in [Cakmak2020risk]_ can be found at
https://botorch.org/tutorials/risk_averse_bo_with_environmental_variables.
The steps for using this to obtain samples of a risk measure are as follows:
- Train a model on `(x, w)` inputs and the corresponding observations;
- Pass in an instance of `AppendFeatures` with the `feature_set` denoting the
samples of `W` as the `input_transform` to the trained model;
- Call `posterior(...).rsample(...)` on the model with `x` inputs only to
get the joint posterior samples over `(x, w)`s, where the `w`s come
from the `feature_set`;
- Pass these posterior samples through the `RiskMeasureMCObjective` of choice to
get the samples of the risk measure.
Note: The samples of the risk measure obtained this way are in general biased
since the `feature_set` does not fully represent the distribution of the
environmental variable.
Possible examples for using a callable include statistical models that are built on
PyTorch, built-in mathematical operations such as torch.sum, or custom scripted
functions. By this, this input transform allows for advanced feature engineering
and transfer learning models within the optimization loop.
Example:
>>> # We consider 1D `x` and 1D `w`, with `W` having a
>>> # uniform distribution over [0, 1]
>>> model = SingleTaskGP(
... train_X=torch.rand(10, 2),
... train_Y=torch.randn(10, 1),
... input_transform=AppendFeatures(feature_set=torch.rand(10, 1))
... )
>>> mll = ExactMarginalLogLikelihood(model.likelihood, model)
>>> fit_gpytorch_mll(mll)
>>> test_x = torch.rand(3, 1)
>>> # `posterior_samples` is a `10 x 30 x 1`-dim tensor
>>> posterior_samples = model.posterior(test_x).rsamples(torch.size([10]))
>>> risk_measure = VaR(alpha=0.8, n_w=10)
>>> # `risk_measure_samples` is a `10 x 3`-dim tensor of samples of the
>>> # risk measure VaR
>>> risk_measure_samples = risk_measure(posterior_samples)
"""
is_one_to_many: bool = True
def __init__(
self,
feature_set: Optional[Tensor] = None,
f: Optional[Callable[[Tensor], Tensor]] = None,
indices: Optional[List[int]] = None,
fkwargs: Optional[Dict[str, Any]] = None,
skip_expand: bool = False,
transform_on_train: bool = False,
transform_on_eval: bool = True,
transform_on_fantasize: bool = False,
) -> None:
r"""Append `feature_set` to each input or generate a set of features to
append on the fly via a callable.
Args:
feature_set: An `n_f x d_f`-dim tensor denoting the features to be
appended to the inputs. Default: None.
f: A callable mapping a `batch_shape x q x d`-dim input tensor `X`
to a `batch_shape x q x n_f x d_f`-dimensional output tensor.
Default: None.
indices: List of indices denoting the indices of the features to be
passed into f. Per default all features are passed to `f`.
Default: None.
fkwargs: Dictionary of keyword arguments passed to the callable `f`.
Default: None.
skip_expand: A boolean indicating whether to expand the input tensor
before appending features. This is intended for use with an
`InputPerturbation`. If `True`, the input tensor will be expected
to be of shape `batch_shape x (q * n_f) x d`. Not implemented
in combination with a callable.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: False.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: False.
"""
super().__init__()
if (feature_set is None) and (f is None):
raise ValueError(
"Either a `feature_set` or a callable `f` has to be provided."
)
if (feature_set is not None) and (f is not None):
raise ValueError(
"Only one can be used: either `feature_set` or callable `f`."
)
if feature_set is not None:
if feature_set.dim() != 2:
raise ValueError("`feature_set` must be an `n_f x d_f`-dim tensor!")
self.register_buffer("feature_set", feature_set)
self._f = None
if f is not None:
if skip_expand:
raise ValueError(
"`skip_expand` option is not supported in case of using a callable"
)
if (indices is not None) and (len(indices) == 0):
raise ValueError("`indices` list is empty!")
if indices is not None:
indices = torch.tensor(indices, dtype=torch.long)
if len(indices.unique()) != len(indices):
raise ValueError("Elements of `indices` tensor must be unique!")
self.indices = indices
else:
self.indices = slice(None)
self._f = f
self.fkwargs = fkwargs or {}
self.skip_expand = skip_expand
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs by appending `feature_set` to each input or
by generating a set of features to be appended on the fly via a callable.
For each `1 x d`-dim element in the input tensor, this will produce
an `n_f x (d + d_f)`-dim tensor with `feature_set` appended as the last `d_f`
dimensions. For a generic `batch_shape x q x d`-dim `X`, this translates to a
`batch_shape x (q * n_f) x (d + d_f)`-dim output, where the values corresponding
to `X[..., i, :]` are found in `output[..., i * n_f: (i + 1) * n_f, :]`.
Note: Adding the `feature_set` on the `q-batch` dimension is necessary to avoid
introducing additional bias by evaluating the inputs on independent GP
sample paths.
Args:
X: A `batch_shape x q x d`-dim tensor of inputs. If `self.skip_expand` is
`True`, then `X` should be of shape `batch_shape x (q * n_f) x d`,
typically obtained by passing a `batch_shape x q x d` shape input
through an `InputPerturbation` with `n_f` perturbation values.
Returns:
A `batch_shape x (q * n_f) x (d + d_f)`-dim tensor of appended inputs.
"""
if self._f is not None:
expanded_features = self._f(X[..., self.indices], **self.fkwargs)
n_f = expanded_features.shape[-2]
else:
n_f = self.feature_set.shape[-2]
if self.skip_expand:
expanded_X = X.view(*X.shape[:-2], -1, n_f, X.shape[-1])
else:
expanded_X = X.unsqueeze(dim=-2).expand(*X.shape[:-1], n_f, -1)
if self._f is None:
expanded_features = self.feature_set.expand(*expanded_X.shape[:-1], -1)
appended_X = torch.cat([expanded_X, expanded_features], dim=-1)
return appended_X.view(*X.shape[:-2], -1, appended_X.shape[-1])
[docs]
class FilterFeatures(InputTransform, Module):
r"""A transform that filters the input with a given set of features indices.
As an example, this can be used in a multiobjective optimization with `ModelListGP`
in which the specific models only share subsets of features (feature selection).
A reason could be that it is known that specific features do not have any impact on
a specific objective but they need to be included in the model for another one.
"""
def __init__(
self,
feature_indices: Tensor,
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
) -> None:
r"""Filter features from a model.
Args:
feature_set: An one-dim tensor denoting the indices of the features to be
kept and fed to the model.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: True.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: True.
"""
super().__init__()
if feature_indices.dim() != 1:
raise ValueError("`feature_indices` must be a one-dimensional tensor!")
if feature_indices.dtype != torch.int64:
raise ValueError("`feature_indices` tensor must be int64/long!")
if (feature_indices < 0).any():
raise ValueError(
"Elements of `feature_indices` have to be larger/equal to zero!"
)
if len(feature_indices.unique()) != len(feature_indices):
raise ValueError("Elements of `feature_indices` tensor must be unique!")
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
self.register_buffer("feature_indices", feature_indices)
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs by keeping only the in `feature_indices` specified
feature indices and filtering out the others.
Args:
X: A `batch_shape x q x d`-dim tensor of inputs.
Returns:
A `batch_shape x q x e`-dim tensor of filtered inputs,
where `e` is the length of `feature_indices`.
"""
return X[..., self.feature_indices]
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform
Returns:
A boolean indicating if the other transform is equivalent.
"""
if len(self.feature_indices) != len(other.feature_indices):
return False
return super().equals(other=other)
[docs]
class InputPerturbation(InputTransform, Module):
r"""A transform that adds the set of perturbations to the given input.
Similar to `AppendFeatures`, this can be used with `RiskMeasureMCObjective`
to optimize risk measures. See `AppendFeatures` for additional discussion
on optimizing risk measures.
A tutorial notebook using this with `qNoisyExpectedImprovement` can be found at
https://botorch.org/tutorials/risk_averse_bo_with_input_perturbations.
"""
is_one_to_many: bool = True
def __init__(
self,
perturbation_set: Union[Tensor, Callable[[Tensor], Tensor]],
bounds: Optional[Tensor] = None,
indices: Optional[List[int]] = None,
multiplicative: bool = False,
transform_on_train: bool = False,
transform_on_eval: bool = True,
transform_on_fantasize: bool = False,
) -> None:
r"""Add `perturbation_set` to each input.
Args:
perturbation_set: An `n_p x d`-dim tensor denoting the perturbations
to be added to the inputs. Alternatively, this can be a callable that
returns `batch x n_p x d`-dim tensor of perturbations for input of
shape `batch x d`. This is useful for heteroscedastic perturbations.
bounds: A `2 x d`-dim tensor of lower and upper bounds for each
column of the input. If given, the perturbed inputs will be
clamped to these bounds.
indices: A list of indices specifying a subset of inputs on which to apply
the transform. Note that `len(indices)` should be equal to the second
dimension of `perturbation_set` and `bounds`. The dimensionality of
the input `X.shape[-1]` can be larger if we only transform a subset.
multiplicative: A boolean indicating whether the input perturbations
are additive or multiplicative. If True, inputs will be multiplied
with the perturbations.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: False.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: False.
"""
super().__init__()
if isinstance(perturbation_set, Tensor):
if perturbation_set.dim() != 2:
raise ValueError("`perturbation_set` must be an `n_p x d`-dim tensor!")
self.register_buffer("perturbation_set", perturbation_set)
else:
self.perturbation_set = perturbation_set
if bounds is not None:
if (
isinstance(perturbation_set, Tensor)
and bounds.shape[-1] != perturbation_set.shape[-1]
):
raise ValueError(
"`bounds` must have the same number of columns (last dimension) as "
f"the `perturbation_set`! Got {bounds.shape[-1]} and "
f"{perturbation_set.shape[-1]}."
)
self.register_buffer("bounds", bounds)
else:
self.bounds = None
self.register_buffer("_perturbations", None)
self.indices = indices
self.multiplicative = multiplicative
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the inputs by adding `perturbation_set` to each input.
For each `1 x d`-dim element in the input tensor, this will produce
an `n_p x d`-dim tensor with the `perturbation_set` added to the input.
For a generic `batch_shape x q x d`-dim `X`, this translates to a
`batch_shape x (q * n_p) x d`-dim output, where the values corresponding
to `X[..., i, :]` are found in `output[..., i * n_w: (i + 1) * n_w, :]`.
Note: Adding the `perturbation_set` on the `q-batch` dimension is necessary
to avoid introducing additional bias by evaluating the inputs on independent
GP sample paths.
Args:
X: A `batch_shape x q x d`-dim tensor of inputs.
Returns:
A `batch_shape x (q * n_p) x d`-dim tensor of perturbed inputs.
"""
# NOTE: If we had access to n_p without evaluating _perturbations when the
# perturbation_set is a function, we could move this into `_transform`.
# Further, we could remove the two `transpose` calls below if one were
# willing to accept a different ordering of the transformed output.
self._perturbations = self._expanded_perturbations(X)
# make space for n_p dimension, switch n_p with n after transform, and flatten.
return self._transform(X.unsqueeze(-3)).transpose(-3, -2).flatten(-3, -2)
@subset_transform
def _transform(self, X: Tensor):
p = self._perturbations
Y = X * p if self.multiplicative else X + p
if self.bounds is not None:
return torch.maximum(torch.minimum(Y, self.bounds[1]), self.bounds[0])
return Y
@property
def batch_shape(self):
"""Returns a shape tuple such that `subset_transform` pre-allocates
a (b x n_p x n x d) - dim tensor, where `b` is the batch shape of the
input `X` of the transform and `n_p` is the number of perturbations.
NOTE: this function is dependent on calling `_expanded_perturbations(X)`
because `n_p` is inaccessible otherwise if `perturbation_set` is a function.
"""
return self._perturbations.shape[:-2]
def _expanded_perturbations(self, X: Tensor) -> Tensor:
p = self.perturbation_set
if isinstance(p, Tensor):
p = p.expand(X.shape[-2], *p.shape) # p is batch_shape x n x n_p x d
else:
p = p(X) if self.indices is None else p(X[..., self.indices])
return p.transpose(-3, -2) # p is batch_shape x n_p x n x d
[docs]
class OneHotToNumeric(InputTransform, Module):
r"""Transform categorical parameters from a one-hot to a numeric representation."""
def __init__(
self,
dim: int,
categorical_features: Optional[Dict[int, int]] = None,
transform_on_train: bool = True,
transform_on_eval: bool = True,
transform_on_fantasize: bool = True,
) -> None:
r"""Initialize.
Args:
dim: The dimension of the one-hot-encoded input.
categorical_features: A dictionary mapping the starting index of each
categorical feature to its cardinality. This assumes that categoricals
are one-hot encoded.
transform_on_train: A boolean indicating whether to apply the
transforms in train() mode. Default: False.
transform_on_eval: A boolean indicating whether to apply the
transform in eval() mode. Default: True.
transform_on_fantasize: A boolean indicating whether to apply the
transform when called from within a `fantasize` call. Default: False.
Returns:
A `batch_shape x n x d'`-dim tensor of where the one-hot encoded
categoricals are transformed to integer representation.
"""
super().__init__()
self.transform_on_train = transform_on_train
self.transform_on_eval = transform_on_eval
self.transform_on_fantasize = transform_on_fantasize
categorical_features = categorical_features or {}
# sort by starting index
self.categorical_features = OrderedDict(
sorted(categorical_features.items(), key=lambda x: x[0])
)
if len(self.categorical_features) > 0:
self.onehot_idx = [
np.arange(start, start + card)
for start, card in self.categorical_features.items()
]
idx = np.concatenate(self.onehot_idx)
if len(idx) != len(set(idx)):
raise ValueError("Categorical features overlap.")
if max(idx) >= dim:
raise ValueError("Categorical features exceed the provided dimension.")
self.numerical_idx = list(set(range(dim)) - set(idx))
offset = 0
self.ordinal_idx = []
for start, card in self.categorical_features.items():
self.ordinal_idx.append(start - offset)
offset += card - 1
reduced_dim = len(self.ordinal_idx) + len(self.numerical_idx)
self.new_numerical_idx = list(
set(range(reduced_dim)) - set(self.ordinal_idx)
)
self.numeric_dim = len(self.new_numerical_idx) + len(
self.categorical_features
)
[docs]
def transform(self, X: Tensor) -> Tensor:
r"""Transform the categorical inputs into integer representation.
Args:
X: A `batch_shape x n x d`-dim tensor of inputs.
Returns:
A `batch_shape x n x d'`-dim tensor of where the one-hot encoded
categoricals are transformed to integer representation.
"""
if len(self.categorical_features) > 0:
X_numeric = X[..., : self.numeric_dim].clone()
# copy the numerical dims over
X_numeric[..., self.new_numerical_idx] = X[..., self.numerical_idx]
for i in range(len(self.categorical_features)):
X_numeric[..., self.ordinal_idx[i]] = X[..., self.onehot_idx[i]].argmax(
dim=-1
)
return X_numeric
return X
[docs]
def untransform(self, X: Tensor) -> Tensor:
r"""Transform the categoricals from integer representation to one-hot.
Args:
X: A `batch_shape x n x d'`-dim tensor of transformed inputs, where
the categoricals are represented as integers.
Returns:
A `batch_shape x n x d`-dim tensor of inputs, where the categoricals
have been transformed to one-hot representation.
"""
if len(self.categorical_features) > 0:
s = list(X.shape)
s[-1] = len(self.numerical_idx) + len(np.concatenate(self.onehot_idx))
X_onehot = torch.zeros(size=s).to(X)
X_onehot[..., self.numerical_idx] = X[..., self.new_numerical_idx]
for i in range(len(self.categorical_features)):
X_onehot[..., self.onehot_idx[i]] = one_hot(
X[..., self.ordinal_idx[i]].long(),
num_classes=len(self.onehot_idx[i]),
).to(X_onehot)
return X_onehot
return X
[docs]
def equals(self, other: InputTransform) -> bool:
r"""Check if another input transform is equivalent.
Args:
other: Another input transform.
Returns:
A boolean indicating if the other transform is equivalent.
"""
return (
type(self) is type(other)
and (self.transform_on_train == other.transform_on_train)
and (self.transform_on_eval == other.transform_on_eval)
and (self.transform_on_fantasize == other.transform_on_fantasize)
and self.categorical_features == other.categorical_features
)